EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS091-24158

Organism

Homo sapiens

Tissue/cell

HepG2

Coordinate

chr19:42462540-42462880

Target genes

Number: 16
Name	Ensembl ID

BCKDHA	ENSG00000248098
CEACAM6	ENSG00000086548
CEACAM3	ENSG00000170956
LYPD4	ENSG00000183103
RPS19	ENSG00000105372
CD79A	ENSG00000105369
ARHGEF1	ENSG00000076928
RABAC1	ENSG00000105404
ATP1A3	ENSG00000105409
ZNF574	ENSG00000105732
DEDD2	ENSG00000160570
GSK3A	ENSG00000105723
ERF	ENSG00000105722
CIC	ENSG00000079432
PAFAH1B3	ENSG00000079462
CEACAM1	ENSG00000079385

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr19:42462746-42462757	GGGGGCGGGGC	-	6.02
KLF5	MA0599.1	chr19:42462747-42462757	GGGGCGGGGC	-	6.02
SP1	MA0079.4	chr19:42462745-42462760	TGGGGGCGGGGCCTG	-	6.56
SP4	MA0685.1	chr19:42462743-42462760	CTTGGGGGCGGGGCCTG	-	6.3
Zfx	MA0146.2	chr19:42462746-42462760	GGGGGCGGGGCCTG	+	6.19

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

SE_23603	chr19:42459527-42464005	Colon_Crypt_1
SE_24108	chr19:42459676-42463857	Colon_Crypt_2

Enhancer Sequence

GGAGGAGTGC AGGGAGGCAG CGGTTAGACA GCTGGGGCTG GGCCAGCCCG ACGGCCCTGG 60
CCTTCTCCAC CGGCGGGCGG CAAGCTACAT CCTGGAGACC AGGGAGGGCC AGGTGACATT 120
TAGTCACACT GCATCCTGGC CAGGGTGATG GTGGGGTAGG GGACCTGGCC CTTTGGTGAC 180
AAGGTAGTCT AGCAGAGCCA ATCCTTGGGG GCGGGGCCTG GGCGGTGAGA AGAGGGCCCT 240
GGGCGGTGAG AGGAGGGACC GGGCGGTGAA GGGCGGGGCC TGAGCGGCGA GAGGAGGGGT 300
CCAGCCGGTC GGGGCTAGTG CGGGTGCGGG GCCCGGGAGG 340