EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS091-23998

Organism

Homo sapiens

Tissue/cell

HepG2

Coordinate

chr19:39191360-39191640

Target genes

Number: 19
Name	Ensembl ID

MAP4K1	ENSG00000104814
EIF3K	ENSG00000178982
ACTN4	ENSG00000130402
CAPN12	ENSG00000182472
LGALS7	ENSG00000205076
LGALS7B	ENSG00000178934
LGALS4	ENSG00000171747
ECH1	ENSG00000104823
HNRNPL	ENSG00000104824
RINL	ENSG00000187994
NFKBIB	ENSG00000104825
SIRT2	ENSG00000068903
CTC	ENSG00000262484
MRPS12	ENSG00000128626
SARS2	ENSG00000104835
FBXO27	ENSG00000161243
AC011443.1	ENSG00000183760
PAK4	ENSG00000130669
SAMD4B	ENSG00000179134

dbSUPER

Number of super-enhancer constituents: 33
ID	Coordinate	Tissue/cell

SE_00865	chr19:39188085-39193891	Adrenal_Gland
SE_01543	chr19:39190294-39194051	Aorta
SE_03166	chr19:39190713-39192677	Brain_Angular_Gyrus
SE_03903	chr19:39185394-39193508	Brain_Anterior_Caudate
SE_04868	chr19:39190349-39193915	Brain_Cingulate_Gyrus
SE_05805	chr19:39182078-39206004	Brain_Hippocampus_Middle
SE_07777	chr19:39185584-39193917	Brain_Inferior_Temporal_Lobe
SE_09404	chr19:39182333-39191485	CD14
SE_23062	chr19:39190396-39193754	Colon_Crypt_1
SE_23732	chr19:39190998-39192799	Colon_Crypt_2
SE_24739	chr19:39190408-39193442	Colon_Crypt_3
SE_25779	chr19:39190063-39193510	Duodenum_Smooth_Muscle
SE_26525	chr19:39180697-39193852	Esophagus
SE_27614	chr19:39180632-39201469	Fetal_Intestine
SE_28533	chr19:39164445-39201888	Fetal_Intestine_Large
SE_29583	chr19:39191405-39193843	Fetal_Muscle
SE_31384	chr19:39190375-39193912	Gastric
SE_35430	chr19:39190316-39193869	HepG2
SE_35812	chr19:39168616-39191950	HMEC
SE_36926	chr19:39191350-39194830	HSMMtube
SE_40594	chr19:39180727-39193965	Left_Ventricle
SE_42097	chr19:39180674-39193834	Lung
SE_45660	chr19:39191439-39193181	Osteoblasts
SE_46686	chr19:39191012-39191890	Ovary
SE_47114	chr19:39164477-39226374	Panc1
SE_48555	chr19:39190300-39193928	Right_Atrium
SE_50056	chr19:39182445-39193963	Sigmoid_Colon
SE_52339	chr19:39180899-39193971	Small_Intestine
SE_53291	chr19:39190288-39193583	Spleen
SE_54534	chr19:39190299-39193637	Stomach_Smooth_Muscle
SE_56725	chr19:39190997-39191809	VACO_400
SE_65266	chr19:39190217-39194643	Pancreatic_islets
SE_68725	chr19:39190516-39191505	H9

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH19I038673

chr19

39164536

39206516

Enhancer Sequence

CTCCCAGCCA CGCAGTGCGG CCGAGCCCTG GCACAGGTGC TCTGCCACAG CGGTCCCCAG 60
AGACCCTGCC CACCCAGCTG TCCCATTGCT CCTGGGGAGG AGAGGGCACC CCTTAATAGC 120
TGCACGGTGG TCTGATGGGT GGGGCCAGAG TGGCCTGGTG GGCCAGCAGA GGAACCTGCT 180
TTTGGAGAAC AGAGGAGACT CTAAAGCCTC TCTCCCTCTC GCCCTCTCTC CCTTTCTCTC 240
TCTCTGTCTC GCCCCCTCTT TTCTCTTTGT GCACTTCTCA 280