EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS091-11073

Organism

Homo sapiens

Tissue/cell

HepG2

Coordinate

chr12:120740180-120741360

Target genes

Number: 18
Name	Ensembl ID

RAB35	ENSG00000111737
GCN1L1	ENSG00000089154
RPLP0	ENSG00000089157
RP1	ENSG00000255857
PXN	ENSG00000089159
NME2P1	ENSG00000123009
RNU4	ENSG00000202538
SIRT4	ENSG00000089163
PLA2G1B	ENSG00000170890
TRIAP1	ENSG00000170855
GATC	ENSG00000257218
RPL31P52	ENSG00000219355
SRSF9	ENSG00000111786
DYNLL1	ENSG00000088986
RP11	ENSG00000248008
RPL29P24	ENSG00000241030
RNF10	ENSG00000022840
COQ5	ENSG00000110871

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOXC1	MA0032.2	chr12:120740441-120740452	ATGTTTACATA	-	6.32
Foxd3	MA0041.1	chr12:120741291-120741303	AAACAAACAAAC	-	6.32
HES2	MA0616.2	chr12:120740664-120740674	GGCACGTGCC	+	6.02
HES2	MA0616.2	chr12:120740664-120740674	GGCACGTGCC	-	6.02
IRF1	MA0050.2	chr12:120740511-120740532	TTTTTCTTTTTCTTTTTTTTT	+	6.09
Zfx	MA0146.2	chr12:120741042-120741056	GAGGCCGAGGCGGG	-	6.01

Enhancer Sequence

GGTAAGTGTG TTCTGTGTGT GCTGCGGATT TCTAGAAGTT GTGGATTTCT TGTGAGGGAT 60
TCTATTTCTC CTCTTTGCCC TCGGTGGGAC CTGGAAGAGA GTAGTTGTTC CACTGATGCA 120
CGTTTTCAGC GGGGGTTTCC CCTGACCCTT TGGTCTCGGG AAACCGGACT GTGTGTTTGT 180
TCAGCTGTTC ACGTTTTGCT GTGGAATGTC AAGGAGAAAG CGGGGTCCTG ATCTCAGATC 240
TGGAAAGCCA AACATAAAAT AATGTTTACA TACGGGGTGC ATGTCACTAG AGGATTTATG 300
CATTGCATTG TGTCAAATAA TATGTCAAAG TTTTTTCTTT TTCTTTTTTT TTTTTTTTTT 360
GATACGGAGT CTTGCTTCTT CGCCCAGGCT GGAGTGCAAC GGCGCGATCT CGGCTCACTG 420
CAACCTCCGC CTCCCGGGTT CAAGCAATTC TCCTGCCTCA GCCTCCCTAG TAGCTGGGAT 480
TACGGGCACG TGCCACAATG CCCGGCTAAT TTTTTTTGTA TTTTTAGTAG AGTCGGGGTT 540
TCACCATGTT GGCCAGGCAT GTCTCGAACT CCTGATCTCA AGTGATCTGC CTGCGTCGGC 600
CTCCCAAAGT GCTGGGATTT CAGACGTGAG CCACCGCACC CGGCCCTCTA TTGTTACAGC 660
TAGAAAAGCT GACGGGCAGG GGTCTTGTCT CTCTGATGTG TCCAAGTAGC AGAGCTTGCA 720
GTGGAGGGTA AACTAAAATA AGGGGGAAAT GAAAAAATAA AAGGAATGCG TGTGTGTGCT 780
TAATTACATG AACAAAATCA AACAAAACCT GACTCATTAG GGCCAGACTC AGAGGCTCAC 840
ACCTGTAATT CCAGCACGTT GGGAGGCCGA GGCGGGCAGA TCACTAGAGC TCAGGAGTTC 900
GAGACTAGCC TGGCCAACAT GGTGAAACCC TGCCTCTACT AAAAATACAA TAATTAGCCG 960
GGCATGGTGG CCATGTAGTC CCAGCTATTC TGGAGGCTGA GGCAGGAGAA TCACTTGAAC 1020
CCGGGAGGCG GCGGTTACAG TGAGCCAAGA TCATGCCACT GTACTCTAGC CTGGGCAACA 1080
GAGGGAGACT CTGTCTCAAA AAACAAAACG AAAACAAACA AACAAAAAAT GAGAAAAAAA 1140
AAAAACCACC CCAGTTTCTC ACATGAGGCT TCTTTTTCTC 1180