EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS091-00437

Organism

Homo sapiens

Tissue/cell

HepG2

Coordinate

chr1:12008120-12009820

Target genes

Number: 19
Name	Ensembl ID

FBXO44	ENSG00000132879
FBXO2	ENSG00000116661
FBXO6	ENSG00000116663
MAD2L2	ENSG00000116670
AGTRAP	ENSG00000177674
C1orf167	ENSG00000215910
RP11	ENSG00000177553
CLCN6	ENSG00000011021
MTHFR	ENSG00000177000
NPPA	ENSG00000242349
NPPB	ENSG00000120937
RP5	ENSG00000224904
RNU5E	ENSG00000201801
KIAA2013	ENSG00000116685
PLOD1	ENSG00000083444
MFN2	ENSG00000116688
MIIP	ENSG00000116691
TNFRSF1B	ENSG00000028137
VPS13D	ENSG00000048707

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr1:12008793-12008814	AAAAAGAAAATAAAAGAAAAA	-	6.86
MITF	MA0620.2	chr1:12009369-12009387	CATGGTCACATGACCACC	+	6.3
MITF	MA0620.2	chr1:12009369-12009387	CATGGTCACATGACCACC	-	6.3
RARA(var.2)	MA0730.1	chr1:12009292-12009309	AGGCCATGCTGGGGTCA	+	6.04

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I011949

chr1

12009261

12009410

Enhancer Sequence

CCAGGTAAGG GGTTTCCTGG GTGAGGCAGA GACAGTGAGG GGTGGCAGGA GGATCTAGGA 60
GCTAGTGTCC TTTCCAAACT ACCACGTCTC TTAAGATAGA CTTGGGGCCA CAGGGGAGGC 120
TTCTGGAAGC CTGAAGGATG AAAATGAGTT AGTCGGGAAT GGGAAGACAC AGCAGAGGAC 180
ACAGCATGAG TCTAGGGGGT GATGGAGAGG GAAAGAGTTG GCTAAAGAAA TGCTCAGATG 240
TTAGTGTGCA GGAGCCTCAG CTGAGAGGCT AGTTTAGAGG ACAGGGCCTC GGGATCAGCA 300
TTTCCACAAG TACCACCCCG TAATTTGGGG ATGGGCACGG TCTAGACATC TTCCCGGTAT 360
TATAAACACT GCTCTAAAGA AACATGAGTG GTCCCGCACA GGGGCTCACG CCTGTATTCC 420
CAGCACTTTG GGAGTCTGAT GATCCACTGA GGTCAGGAGT TCGAGACCAG CCTGGCCAAC 480
ATGGCGAAAC CCCATCTCTA CTAAAAATAT AAAAAAATTA GCTGGGCATG ATGGCACGCA 540
CCTGTAATCC CAGCTGCTTA GGAGGCTGAG GCGGGAGAAT CACTTGAACC TGGGAGGCGG 600
AGGTTGCAGT GAGCCGAGGT GGCGTCACTG CACTCCAGCC TGGGCAATAG AGTGAAACTC 660
TGTCTCAAAA AAAAAAAAGA AAATAAAAGA AAAAAGAAAC ATGAGCTAAT GCCCGATCGA 720
CCACTGGCAT GGGCTTGGTG TCATCTGTGT GCAGTCCATG GGGCTGAGCC CTGCAGGGAG 780
ACGAGTATCC TGAGTGCTTC CTTATGTCAG GCACAAGGTT GGGCACTGGC AATAGGGTGA 840
TGGACAATAC AGAACATGTC ATTGCTTACA CAGAGCTTGC AATCTAGTGG CATTAAGTCA 900
GCAAGCAAGT GTATCAGCTC ACATGAATGA GGGTTGCAGC AGAGGGTTGC TTCAGGCATG 960
GCTGGATCCA GGGATTCAAG CAGCAAAGTG AGGGCCTTGT GTTTCCATCT CTAGGCCCTG 1020
TTTGTTTTAA TCGTGGTGGC AAGATGACCA CCAGCCACAG ATTCATGTGC CCCAGTTTCT 1080
CAACTTCAGC AGAAGGAGAC AGGCTTTCCT TTTTAGGAAA GGCCTGCAGA CTGTTCTGTT 1140
TTTCACAGAA CAGTCCCAGG GAAGGCGCTG ATAGGCCATG CTGGGGTCAC ATGCTCAAAT 1200
CTCCGGATGT GGGAGGGGCA GGAAGGGTGG GACATTCTGA TTGGACAGGC ATGGTCACAT 1260
GACCACCAGG AACCGGCTAA TCCTCATACA GGTGGAGAAT GGTTTCCTTA CAGGGGAGGG 1320
TCAGAGTTGC TGGACCCACA GGAGCAAAAA AATTATTTCT TTTTCTCTTT TTTTGAGACG 1380
GAGTGTTGCT CTGTCTCCCA GGCTGAAGTG CAATGGAGCG ATTTCGGCTC ACTGGAACCC 1440
CCACCTCCCG GGTTCAAGCA ATTCTCCTAC TTTAGCCTCC CGAGTAGCTG GAATTAGAGG 1500
CATGTGCCAC CACACGCCGC TAATTTTTGT GTTTTTAGTA GAGACAGGGT TTCGCCATGT 1560
TGGCCAGTCT GGTCTTGAAT TCCTGACCTC AGGTGGTCCA CACGTCTCGG CCTCCCAAAG 1620
TGCTGGGATT ACCAGCATGA GCCACCACGG CCAGCCCTGG AAAAATATTT CTTTACCAAA 1680
AGCCCGTGTT AAGGGGTGTT 1700