EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS091-00073

Organism

Homo sapiens

Tissue/cell

HepG2

Coordinate

chr1:1654270-1655690

Target genes

Number: 30
Name	Ensembl ID

SDF4	ENSG00000078808
PUSL1	ENSG00000169972
ACAP3	ENSG00000131584
RP5	ENSG00000240731
CPSF3L	ENSG00000127054
GLTPD1	ENSG00000224051
DVL1	ENSG00000107404
AURKAIP1	ENSG00000175756
CCNL2	ENSG00000221978
RP4	ENSG00000224870
MRPL20	ENSG00000242485
ANKRD65	ENSG00000235098
TMEM88B	ENSG00000205116
TMEM240	ENSG00000205090
AL645728.2	ENSG00000215791
SSU72	ENSG00000160075
AL645728.1	ENSG00000215014
C1orf233	ENSG00000228594
MIB2	ENSG00000197530
MMP23B	ENSG00000189409
CDK11B	ENSG00000248333
SLC35E2B	ENSG00000189339
MMP23A	ENSG00000215914
CDK11A	ENSG00000008128
RP1	ENSG00000227775
SLC35E2	ENSG00000215790
NADK	ENSG00000008130
GNB1	ENSG00000078369
C1orf86	ENSG00000162585
SKI	ENSG00000157933

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

REST

MA0138.2

chr1:1655364-1655385

ACTAGCACACTGGACAGCTGC

6.14

dbSUPER

Number of super-enhancer constituents: 7
ID	Coordinate	Tissue/cell

SE_14824	chr1:1653733-1657099	CD4_Memory_Primary_7pool
SE_21244	chr1:1654255-1657134	CD8_Memory_7pool
SE_23186	chr1:1654223-1656981	Colon_Crypt_1
SE_23960	chr1:1654817-1656465	Colon_Crypt_2
SE_30279	chr1:1654808-1657454	Fetal_Muscle
SE_52748	chr1:1654127-1657056	Small_Intestine
SE_53825	chr1:1654205-1657234	Spleen

Enhancer Sequence

CTGCAAAAAG AAAAATAATT CAGCCTACAT CAGGACACAG CAAGCTATGG TGCTGAACAC 60
TTGAACCTAG TCACTTTTGA GGGATTCAGA ATAAATCCTC ATTAAGAATA AGAAGTTGTG 120
CCCGGCGCAG TGGCTCAAGA CGGTAACCCT AGCACTTTGG GAGGCCGAGG CGAGCAGATC 180
GCTGGAGTTC CGGAGTTCAA CACCAGCCCG GGCAACATGG CAAAACCTCG TCTCTACAAA 240
AAATACAAAA GTTAGCCCAG TGTGGTGGCG CGTGCCTGTA TTCCTAGCTA CAGGAAGGAG 300
GCTGCTAGAG GCAGGAGGAT CACTTGAATC AGAGAGGTCA AGGCTGCAAT GAGCCAAGAC 360
TGCGCCACTG CACTCCAGCC TAGATAACAA AGTAAGACTT GGTTAAAAAA AAAAAAAAAA 420
AAAGGTAAGC TCTAGGCTGA GGCGGGTGGA TCACAAGGTC GGGAGGTCAA GACCAGCCTG 480
GCCAACACGG CGAAAACCCT GTCTCCACTA AAAATACAAA ACTTAGCTGG GCGTGGTGGC 540
GGGTGCCTGT AATCCCAGCT ACTCGGGAGG CCGAGGCAGC AGAATCGCTT GAATCCGAAA 600
GGCGGAGGTT CCGGTGAGCC GAGGTCGCGT CACTGCACTC CAGCAAGACC CCGTCTCAAA 660
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AACAAGAATG ATAAGTTGTA AGCCAGGCAA 720
GGTGGCGAGC GCCTGTAGTC CCATATACTC TGCAAGCTGA GATGGGAGAC CGATTGAGCC 780
CAGGAGTTCC AGGCTGAAGT GCGCTTGTGA ACAGCCACTG CGCTGCAGCA TGGGCGACAA 840
AAAAGAGTGA TGGGTTCTGA AAAATGACCG CTTGAAATCA AGTCTCGTTT CTGTCATTCT 900
TGTATGGTCT TGGGTAACGT AATTCACCTC AGTTCAGTCT TCCGTACAAC CAGAATAACA 960
ACACCTACGT GATAGTATCG ATCGCGGATT AAAGATCATC CGTTTAAAGG CTCTTAACTC 1020
AGGACCTGCC ACTCATCAAA CACTGCTTTT ACTGTCAGAA TCTGCTAGAA AGACCGCTTG 1080
GACTACGTGA AGCCACTAGC ACACTGGACA GCTGCACCTT GAGACCGGGG AGATGCTCCG 1140
AGATGTGCTC GCGAACAAGG CCACCTGACC CGGGCACTGG GCTATTTCCT CGGGTTCAGT 1200
CCCGCACACT TGAGGTTCAG CCTGGCAGAC GTTGGCTCCA GACAGCGTTT GGACCCGCCG 1260
CCTCCACCAC CCAAAGTTCC GTGCGGGATG AGACTGTCCG CGGAAGCGAG GGTGTCGCTC 1320
GCCCCCGGGC CCGGGTCCGC CCCGCTCCGA GGCCTGCTCG GAAGAAAGAC CTCGGTGCGC 1380
AGTTCTCGTC GCGCTCCCAC ACCTGGTCCG CCCAGTCGGA 1420