EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS088-26335

Organism

Homo sapiens

Tissue/cell

HeLa-S3

Coordinate

chr19:3274970-3275850

Target genes

Number: 27
Name	Ensembl ID

SGTA	ENSG00000104969
THOP1	ENSG00000172009
ZNF57	ENSG00000171970
AC006277.2	ENSG00000253392
ZNF77	ENSG00000175691
TLE6	ENSG00000104953
TLE2	ENSG00000065717
AES	ENSG00000104964
GNA11	ENSG00000088256
GNA15	ENSG00000060558
NCLN	ENSG00000125912
DOHH	ENSG00000129932
FZR1	ENSG00000105325
C19orf71	ENSG00000183397
MFSD12	ENSG00000161091
HMG20B	ENSG00000064961
GIPC3	ENSG00000179855
TBXA2R	ENSG00000006638
C19orf29	ENSG00000105298
PIP5K1C	ENSG00000186111
TJP3	ENSG00000105289
APBA3	ENSG00000011132
MRPL54	ENSG00000183617
MATK	ENSG00000007264
EEF2	ENSG00000167658
PIAS4	ENSG00000105229
MAP2K2	ENSG00000126934

TF binding sites/motifs

Number: 11

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Myod1	MA0499.1	chr19:3275082-3275095	AGTGACAGCTGCC	-	6.04
RFX1	MA0509.2	chr19:3275101-3275117	GGTTTCCATAGTAACC	-	6.17
RFX1	MA0509.2	chr19:3275101-3275117	GGTTTCCATAGTAACC	+	6.19
RFX2	MA0600.2	chr19:3275101-3275117	GGTTTCCATAGTAACC	+	6.67
RFX2	MA0600.2	chr19:3275101-3275117	GGTTTCCATAGTAACC	-	6.71
RFX5	MA0510.2	chr19:3275101-3275117	GGTTTCCATAGTAACC	-	6.76
RFX5	MA0510.2	chr19:3275101-3275117	GGTTTCCATAGTAACC	+	6.8
ZIC1	MA0696.1	chr19:3275252-3275266	CCCAGCAGGGGGTC	-	6.82
ZIC3	MA0697.1	chr19:3275251-3275266	ACCCAGCAGGGGGTC	-	6.68
ZIC4	MA0751.1	chr19:3275251-3275266	ACCCAGCAGGGGGTC	-	6.84
ZNF263	MA0528.1	chr19:3275751-3275772	TCTTCCTGCCCTGCCGCCTCC	-	6.06

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH19I003274

chr19

3274828

3277103

Enhancer Sequence

TCTCTCTGTC TCTCACAGTC TCTTTCGCGC GCACTCTCTC TCTGATCTGT CTCTCTCTCT 60
CCCTGATTCT CAGTCTCTCT GCTGGTTTCT CTCTCTCCCT CCCACCCCCA TGAGTGACAG 120
CTGCCGAGAG CGGTTTCCAT AGTAACCCAG CTCACCGTCC CTAGGAGATG AAGCCACCAC 180
GTTCCCCATT ACCAGGGAGC ATGCAGTTAC CCAAGGGGGC AGAGCTCACA CAGGAGAGGC 240
TGGCCCAGCT CCGGCCTCAG ACCAGGTTCC AGCCCAGCCC CACCCAGCAG GGGGTCCAGC 300
CTGCCAAGGC CCCTGGTCCA CTGAGCACGT GAACCCTCAC TCCACTCCAC AGATGGTGAC 360
TGCCTGGCCC CTCTTGATCC CGACAAAGTT GGGCAGGGGC CTCTGCTGGG CACCGTGAAA 420
GTGCGGGGAC CATCAGTGCC CACCTCCGCC TGGCAGGTCC GGGGAGCAGA CAGAAAGACA 480
GACAGACAGA CAGACAGGGA CCCAGGCCCG GCGAGGCAGC TCCTAGCCCT AGTACTCGGT 540
GCGGGCTCTC TGAGTGCACC AGAGGGAAAG GTCATCTCCG CCTGGAGGGG GAGCAGTGGA 600
GCAGAGACCC CAAAAGACTG CAGGGAGGGC ATTCCAGGCG GGGGCGCCAC CTGGGCAAAG 660
GCCGGGAGAT GGGAGCGTGC AGGGCCCGTG GGAGGGTGGA GAGATCCGGG GCAGGGAAAG 720
GGCGCGGCTG GGTCCTCCCT CGCACGCGCA GAACCGGAGC CGGCAGGGCC CGGGCGCCGC 780
GTCTTCCTGC CCTGCCGCCT CCACTCTGCT GGAGGGAGGG AGGAATCCCG GAGGCCCTCC 840
CGGAGGCCGG GGACTCGGCT GAGGTGGGTG TCGCCGCCCA 880