EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS088-10041

Organism

Homo sapiens

Tissue/cell

HeLa-S3

Coordinate

chr11:63689320-63690740

Target genes

Number: 34
Name	Ensembl ID

RP11	ENSG00000203520
PLA2G16	ENSG00000176485
ATL3	ENSG00000184743
RTN3	ENSG00000133318
C11orf95	ENSG00000188070
C11orf84	ENSG00000168005
MARK2	ENSG00000072518
RCOR2	ENSG00000167771
U6	ENSG00000207200
COX8A	ENSG00000176340
AP000721.4	ENSG00000256100
OTUB1	ENSG00000167770
FLRT1	ENSG00000126500
MACROD1	ENSG00000133315
STIP1	ENSG00000168439
NUDT22	ENSG00000149761
TRPT1	ENSG00000149743
DNAJC4	ENSG00000110011
VEGFB	ENSG00000173511
FKBP2	ENSG00000173486
PPP1R14B	ENSG00000173457
PLCB3	ENSG00000149782
GPR137	ENSG00000173264
BAD	ENSG00000002330
KCNK4	ENSG00000182450
C11orf20	ENSG00000219435
ESRRA	ENSG00000173153
TRMT112	ENSG00000173113
PRDX5	ENSG00000126432
AP003774.1	ENSG00000236935
CCDC88B	ENSG00000168071
RPS6KA4	ENSG00000162302
MIR1237	ENSG00000221273
SF1	ENSG00000168066

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NEUROD2	MA0668.1	chr11:63690478-63690488	ACCATATGGC	-	6.02
RREB1	MA0073.1	chr11:63690652-63690672	CCCCACCACACACACACACC	+	6.46
RREB1	MA0073.1	chr11:63690654-63690674	CCACCACACACACACACCCC	+	6.63
Stat4	MA0518.1	chr11:63690196-63690210	CTTCCAGGAAAAGG	+	6.67

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

SE_06224

chr11:63681954-63689576

Brain_Hippocampus_Middle

Enhancer Sequence

AGCTGCTCCA TGACATTGGA CACTTCACAT CTTCTCAACT ATGGGTTGAA CATTTCCCAC 60
AAAGTCCATG TGTTGGAAAC TTAATCCCTA CTACAACAGT GTTGAGAGGT GGGACCTTTG 120
GGCATGAGGC AGTGCCCTCA GGAATGGATT AATGCCATTA TCTCAAGAGT GGGTTAGTTA 180
TTGAGGGAGT GGGTTCTAGA TAAAAGATGA GTTTGGCCCC CTAATCCCAC CCTGCATGTG 240
AGTTCCTGCT GCCATGTGAG GATGCAGCAA GAAGGTCCTC ACCAGATTCC AGCACCATGC 300
TCTTGGACTT CCCAGCCTCC CAAACTGTGA GCCAAATAAA CTTTTTTGTT TGTAAACTAC 360
CCAGTCTCAG GTATTCTGTT ACAGCAACAC AAAATGGACT AAGATACTCC CTTTAGACAT 420
GTCAGCAGTT CCAGATAGGT ATCTGGAACT TCAGCCTTCA GTCTGACCTC TCTAATCACT 480
CTAATTATAC ACTATACACA CATAATACAA ATATTTTTTT TCTAGACCAA CTCTTGCTCT 540
GTTGCCCAGG CTGAAATGTA GTGGTATGAG CTCGGCTCAC TGTAACCTCT GCCTCCCAGG 600
TTTAAGCGAT TCTTTTGCCT CAGCCTCCCG AGTAGTGGGG ATTACAGACA TGCGCCACCA 660
CGCCTGGCTC ATTTTTGTGT TTTTGGTAGA GACGGGGTTT TGCCATTTTG GCCAGGCGGG 720
TCTGGAACTC CTGATCTCAA GCAATTCACC TGCCTTGGCT CCCAAAGTGT TGGGATTACA 780
AGTGTGAGCC ACTGCGCCAG GCCACTGAAT ACAAATTTTT AAATATAGCT TCGATTATAT 840
CCCATTCCTT CTCAGCCTTC CACGGTTCCC TATTGCCTTC CAGGAAAAGG TCTCACAGCC 900
CAGTACTCAA GGGGTTTCTA GCCCATGTAT GATCCAGCCA AACAGGTGGC TCACCATTCT 960
CTGAGCCTCA CCTGGTGGCC CAGGATGCTC CACCCACCCT GCAAACCCTG GCCTGGCTCA 1020
CCCATCTGCA TGCCCCATGC CCAGCCCTTC CCTCAGGGCT GCTGGGTGCT CTGCTCTGCC 1080
AGGGCACATC CAGGACTTCT GGCTGAGCAG TGAGTACCCT TCCTGCTCTC CCCACAGTCC 1140
CCCTCCACCA CTCCAGCCAC CATATGGCTC TTAGCATAGG ACCTTGCCTC CCACTTCCAG 1200
AGGGAAGTGA GGCCATCTGG GAGGAACCCC TTCATGGCCT TTGTCTGCTC CTTCCCCTCC 1260
CTGTAGCATA GATGGACCTT CCCCCTTCAA GGCCAACCTC ACTCCCAGGC TTTGCATCAC 1320
CCTCAGTGCC AGCCCCACCA CACACACACA CCCCAATCCT GAGCACCTTG ATTTTCATTT 1380
TCCTCTCCTT ACTCATGTTT GTCTTCCCCC CTCATCACAT 1420