EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS075-00039

Organism

Homo sapiens

Tissue/cell

GM19240

Coordinate

chr1:28571730-28572240

Target genes

Number: 11
Name	Ensembl ID

PPP1R8	ENSG00000117751
C1orf38	ENSG00000130775
RPA2	ENSG00000117748
EYA3	ENSG00000158161
RP5	ENSG00000228589
PTAFR	ENSG00000169403
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
RCC1	ENSG00000180198

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HES2	MA0616.2	chr1:28571814-28571824	GGCACGTGCC	+	6.02
HES2	MA0616.2	chr1:28571814-28571824	GGCACGTGCC	-	6.02

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

SE_15081	chr1:28571965-28577001	CD4_Memory_Primary_7pool
SE_21005	chr1:28572183-28576988	CD8_Memory_7pool
SE_29182	chr1:28569155-28576849	Fetal_Intestine_Large

Enhancer Sequence

CGAGGTCAGG AGATGAAGAC CATCCTGGCT AACACGGTGA AACCCTGTCA CTACTAAAAA 60
TACAAAAAAT TAGCCGGGCG TAGTGGCACG TGCCTGTAGT CCCAGCTACT CGAGAGGCTG 120
AGGCAGGAGA ATCACTTGAA CCTGGGAGGT GGAGGTTGTG GTGAGCCGAG ATAGCCCCAC 180
TGCACTCCAG CCTGGGCGAC AGAGGGAGAC TCCATCTCAA AAAAAAAAAA AAAGTTTTAC 240
AATTAGCATT AAGAGTCTTT TGTTTTTTGG GTTTTTTGTT TTGTTTTGTT TTGTTTTGAG 300
ATGGAGTTTT GCTCTTATTG CCCAGGCTGG AGTGCAATGG CGCGATCTCG GCTCACCGCA 360
ACCTCTGCCT CCCGGGTTCA AGCGATTCTC CTGCCTCAGC CTCCCGAGTA GCTGGGATTA 420
CAGGCATGTG CCACCACGTC CGGCTAATTT TGTACTTTTA GTAGAGACGG GGTTTCCCCA 480
TGTTGGTCAG GCTGGTTTCA AACTCCTGAC 510