EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS060-18508

Organism

Homo sapiens

Tissue/cell

GM12891

Coordinate

chr19:56135000-56135840

Target genes

Number: 29
Name	Ensembl ID

PTPRH	ENSG00000080031
TMEM86B	ENSG00000180089
PPP6R1	ENSG00000105063
HSPBP1	ENSG00000133265
BRSK1	ENSG00000160469
TMEM150B	ENSG00000180061
SUV420H2	ENSG00000133247
TMEM238	ENSG00000233493
RPL28	ENSG00000108107
NAT14	ENSG00000090971
SSC5D	ENSG00000179954
AC008735.15	ENSG00000231274
ZNF579	ENSG00000218891
FIZ1	ENSG00000179943
ZNF524	ENSG00000171443
ZNF865	ENSG00000261221
ZNF784	ENSG00000179922
ZNF580	ENSG00000213015
ZNF581	ENSG00000171425
CCDC106	ENSG00000173581
U2AF2	ENSG00000063244
EPN1	ENSG00000063245
AC010525.2	ENSG00000211571
AC010525.1	ENSG00000203305
NLRP9	ENSG00000185792
RFPL4A	ENSG00000223638
CTD	ENSG00000229292
NLRP4	ENSG00000160505
NLRP11	ENSG00000179873

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr19:56135507-56135517	GCCCCGCCCC	+	6.02
KLF5	MA0599.1	chr19:56135688-56135698	GCCCCGCCCC	+	6.02
Pou2f3	MA0627.1	chr19:56135534-56135550	AATTATGCAAATTATC	+	6.07
SP1	MA0079.4	chr19:56135504-56135519	GAGGCCCCGCCCCTT	+	6.18
SP1	MA0079.4	chr19:56135622-56135637	CAGGCCCCGCCCACC	+	6.67
SP2	MA0516.2	chr19:56135621-56135638	CCAGGCCCCGCCCACCA	+	6.14
SP3	MA0746.2	chr19:56135624-56135637	GGCCCCGCCCACC	+	6.14
SP4	MA0685.1	chr19:56135504-56135521	GAGGCCCCGCCCCTTAC	+	6.23
SP4	MA0685.1	chr19:56135622-56135639	CAGGCCCCGCCCACCAC	+	6.38

dbSUPER

Number of super-enhancer constituents: 6
ID	Coordinate	Tissue/cell

SE_68542	chr19:56135499-56168361	TC71
SE_68543	chr19:56135499-56168361	TC71
SE_68544	chr19:56135499-56168361	TC71
SE_68545	chr19:56135499-56168361	TC71
SE_68546	chr19:56135499-56168361	TC71
SE_68547	chr19:56135499-56168361	TC71

Enhancer Sequence

CCACTTATCT CTCTGACCCC AGCTTAAACA TAAGCCGGCA CCCAGCTGAC TTCTCTCGTC 60
TAAATTTAGC TGCCCCACCC CTACTCTTGG CTCAATTTAT AGAAATTGGC TCAATTTTTA 120
TTTCCTTTAT AGAACATATC ACAGTAACTC TCCTTTATTG TCTCTCTCCT CTCAAGAGAC 180
TGCAGGCTCC AAAAGAACAC AACCCTTGTC TGTCTTGGTC ACTTCTCTAT TTACAGAGCC 240
GAAGTAGGAG CTCAGTAAAT GTTTGTTGAA TGAATGAATG TCCTCAATTA GTCTAATTCT 300
GAGTGGGGTA ACGTGGAGGA AGTTCCAAAG TCACCTAGAC CACCCACTTC TACCCCCAAA 360
TTCTCCCTTG GGCATTCGAG AAGCATCACT AAGACCCTTG AAGAATTATC CCCTACCCCG 420
ACATAGGTGC TCCAATCATA ATCCCCCACG TTTTTCAGGG TCACCTTCCC AACCTTCTAC 480
CCTAGAATTA GCCCTAGAAT TTATGAGGCC CCGCCCCTTA CAAGGCTCCA CCCAAATTAT 540
GCAAATTATC CCTGGTAAGC CCCCTTCCCT GGACCCAAAC CCGTCCCACA AGACAACACC 600
GTCCTCAGAC TCCGCCCCCA TCCAGGCCCC GCCCACCACC CATAGGTCCC TCCCCCACCC 660
CGCCCACCAT GACATAGTCT CCTCCCCTGC CCCGCCCCTC GCGAAACCAC AAGAAGCCCC 720
ACCCCCAGGG CCATAGCACT AAATACCTCC CTCGCCCACC CCCTCATAGG CCACGCCCCG 780
GACCCGCCCC CCACACTACG ACCTCCTCCC ACCTCGAGCC CCACGCCCAG GCCCCTTCCT 840