EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS059-03467

Organism

Homo sapiens

Tissue/cell

GM12878

Coordinate

chr1:182557000-182558300

Target genes

Number: 7
Name	Ensembl ID

RNASEL	ENSG00000135828
RGS16	ENSG00000143333
RP11	ENSG00000261504
RGS8	ENSG00000135824
DHX9	ENSG00000135829
HMGN1P4	ENSG00000224040
RN5S71	ENSG00000199837

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr1:182558037-182558058	TTTCAATTTCACTTTCTCTGT	+	6.62
IRF1	MA0050.2	chr1:182558031-182558052	TCCTGCTTTCAATTTCACTTT	+	7

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

SE_16180	chr1:182557172-182559046	CD4_Naive_Primary_7pool
SE_30080	chr1:182557396-182558774	Fetal_Muscle

Enhancer Sequence

CTTTGCAGTG GTGGAAAAGC AATAAACATT CAGTAGAAAC CACACTTCAA GTACACATAC 60
AACCATTCTG TTTTTTATTT CAGCATAGCA TTCGATAAAT ACATGAGACA TTTAACACTT 120
TATTATAAAA TAAGCTTTGA GCTAGATGAT TTTGCCCAAC TGTAGCCTAA TGTAAGTGTT 180
CTGAGCACAT TTAAGGTAAG CTAGGATAAG CTATGACGTT CAGTAGATTA GGTGTATTAA 240
ATGTGCTTTT GACCTACAAT ATTTTCAATT TAGGATGGGT TTATCTGTAT GTAACCCCAT 300
CATAAGTCAA GGAGTATCTG CAGTAGTGAA AAGAGCTTGT ACTCTGACCT TAGGGAGATC 360
TAAGTTTGAG CTTGTGGCTG TGTAATTTTT TACTATTACT TCCTGTAACC TTGGATTGTT 420
GAATCTCAAT TTTCTATTTC CTGAAATGGA GACAAAAATA AATACAGTCA TGTGTGTAAA 480
GTACATTAAA GTATGGAGTG TTGCAAATAT TAGCCACTCA ATGAATGTTA GAGCTAATTA 540
TATCCCGTTA TGAAAAAATA AATTGCTTAG TGAATTCTAT TCTCCCTACA CATGTGCATA 600
TAGCTACTAC ACGAATAGGC AACTGGCAGC TATCAATTTC GTCCAACTGT CAATCAGATC 660
TGAGAATTAC AGATCCAGTT CAATCATCAG ACAGCCCGAA ACTGTTACCT GAATATTTAA 720
ATAACTGCAT CTGCTATAGA ATTCACGAAG CAACCCTTTT TCAGCAATCT CACCACTCTG 780
ACAGTTTCAA AGCCTCAGAG GTTAATTGAT TAGCCTCTTA GAAGTTTAAT TAATTGTGCA 840
ACACATACAC GATCACCAGG CAATGAAATC TTTGAACCAA AGTGTTTGTG TAGACCGTCC 900
CCATTACAAT CAGATGTGAG GTGGGCTGGT ATAAACAAAG GAGCCGGGAA GGAGAGGAAA 960
TATCAAGGAA GCCCTGAGTG ACGCATCAGA GTAGAGAAGA GACGAGCCTG CGGAAGTACT 1020
CCAACAGACA ATCCTGCTTT CAATTTCACT TTCTCTGTGC GACCTGAGTA AGTCGCAAAG 1080
AGATGCCTGA GAAACTGAGG ACATGGATAA ATGACGTGTG GACTCTGACA GAACTCTGGA 1140
AGGGCACTGG AGGAAGATCC TTCCGGGCAG CCAAGGGCTG GGAGCTCCCC TCCCACTTCC 1200
CAAGTCCTCC AGCCCCTGGC CTCTCCAGTC TCCAAAGCCC AAGAATTCTT CAGGATCGAC 1260
TTATCGAGGT TTTCTAGCTT TCCTCCTTCT GCCTGCCTTA 1300