EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS051-06631

Organism

Homo sapiens

Tissue/cell

Fetal_thymus

Coordinate

chr12:104681950-104682700

Target genes

Number: 7
Name	Ensembl ID

HSP90B1	ENSG00000166598
C12orf73	ENSG00000204954
TDG	ENSG00000139372
RP11	ENSG00000216285
TXNRD1	ENSG00000198431
RPL18AP3	ENSG00000213442
EID3	ENSG00000255150

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr12:104682628-104682639	GCCCCGCCCCC	+	6.02
KLF5	MA0599.1	chr12:104682628-104682638	GCCCCGCCCC	+	6.02
Nr2f6(var.2)	MA0728.1	chr12:104681987-104682002	TGAACTCCTGACCTC	-	6.22
SP1	MA0079.4	chr12:104682625-104682640	GAAGCCCCGCCCCCG	+	6.14
Zfx	MA0146.2	chr12:104682010-104682024	CCCGCCTCGGCCTC	+	6.01

dbSUPER

Number of super-enhancer constituents: 10
ID	Coordinate	Tissue/cell

SE_34884	chr12:104677635-104684238	HeLa
SE_35684	chr12:104679453-104684093	HepG2
SE_36089	chr12:104678639-104684092	HMEC
SE_37896	chr12:104679239-104684021	HSMMtube
SE_38580	chr12:104678682-104684258	HUVEC
SE_40270	chr12:104679442-104683833	K562
SE_45122	chr12:104679274-104683587	NHLF
SE_46200	chr12:104678710-104683855	Osteoblasts
SE_47243	chr12:104677601-104687671	Panc1
SE_64617	chr12:104678850-104684146	NHEK

Enhancer Sequence

TAGAGACAGG GTTTCACCAT CTTGGCCAGG CTGGTCTTGA ACTCCTGACC TCATGATCCA 60
CCCGCCTCGG CCTCCCAAAT AAGCAGCTAT ACTTTTGAAT GTTGGCGTGA TTTATGTCTA 120
ATGAATAGGC CTCATGTCAG TGTAACTGTG GAATCTGTAT GTTCCACTGA GTTCACCCCT 180
TTGTGAAATT TTACCATTAG TGCCTAGTTT CATCTGTAGC GTTGTGTATT GCTTCAGGAT 240
TCTTTTTAAG AATGCACCAG GTAGGCAGAG TGTTCTTAAT TTTGCTCCAC GGTTTCAAAT 300
GTCAAGGAAA CGTTGGAAGT TGGATTTTGG CATTCAGTAT AGATGCAGAG TTGAAAGCAA 360
GATCAAACTG GGAGGTGTTT TGTGAAAGTT GAGATAAACG TGTATTAAGC TTCTTTTTTG 420
AAGCTTTTCT GAATTCGGGA TTTACCGGGA AAGTAGGACG TTTAATTTTA GCGGAGTAGT 480
GCAATGATTT AACCCTGACT AGAACTCTGA CGTTTACAGC TAGCCTTGAG GCCATGTTTT 540
CAGCCAGTGT GCGGATTTGC CGGGGTCAGA CTCCAAGCTT GATTGTGAGT TCTAGCCTTT 600
GTCAGAAATG CAGCAAGTCA TGCTAACTTG CAAGGGAGTC AACAGAGGGC ACGCGGTGCC 660
TGCGGGGCCG GGACGGAAGC CCCGCCCCCG GCGCAGTTCC CGCCTGTTAG CGGGGGAGAA 720
GCACCTTACA CGCTCCGCTC TGCTTTTGTG 750