EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS051-00704

Organism

Homo sapiens

Tissue/cell

Fetal_thymus

Coordinate

chr1:37979140-37979810

Target genes

Number: 11
Name	Ensembl ID

RP11	ENSG00000233621
ZC3H12A	ENSG00000163874
MEAF6	ENSG00000163875
FTH1P1	ENSG00000232273
SNIP1	ENSG00000163877
RP3	ENSG00000237749
GNL2	ENSG00000134697
RSPO1	ENSG00000169218
C1orf109	ENSG00000116922
CDCA8	ENSG00000134690
Y	ENSG00000200421

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RFX1	MA0509.2	chr1:37979571-37979587	AGTTGCTATGGAAACC	+	6.07
RFX1	MA0509.2	chr1:37979571-37979587	AGTTGCTATGGAAACC	-	6.09
RFX2	MA0600.2	chr1:37979571-37979587	AGTTGCTATGGAAACC	-	6.56
RFX2	MA0600.2	chr1:37979571-37979587	AGTTGCTATGGAAACC	+	6.57
RFX5	MA0510.2	chr1:37979571-37979587	AGTTGCTATGGAAACC	-	6.57
RFX5	MA0510.2	chr1:37979571-37979587	AGTTGCTATGGAAACC	+	6.63

HEDD

Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder
Number of disease enhancers: 1
Chromosome	Start	End

chr1

37979470

37979572

Enhancer Sequence

TGAGAGATGA AAAACAAGGA CATGAATGAT ACCTTTTAAA TGCAAACACT TAAGTCTGGC 60
CAAAATGAAA TCCTGATATT AGACTCGTAA ACGCAAGCTT GCCCACACTA AACCACCCTG 120
TGGAGAGATG GAAGATACGG GGAGGAGGAG CCGTTTAGGA CTAAGACAGT CTAGACCTTT 180
GGGGGTGATG GACCCCTGAA TGTATAAAGC ATGTCTCCAG AAAAATACAC ACACACGCGA 240
AATTTTGCAT ATACTTTAGA GGATTCACGG AAACCATGAG TCAAGAGCCC AGGCTAACGC 300
AGAACTTGGG CGATGTCCAC TCCCACGCAC AAAAGGTATC GCTACCAGGA GAGGGAAAGG 360
TGAGCAGCCT TTCAGCGTCA ACTCGCTCCC CTCCCCGCAG GCTCAAGAGA GGCCGCCGAC 420
ACCGGGCTGC CAGTTGCTAT GGAAACCTAG AAGGGCAGCT TCAGGTGAGA GGGGCCTCCC 480
GGGTGCCCAA GCCGAGACGC GGGGGCAGGA AGAGCTTAGC CACCAGAGTG CATTGGGCCT 540
TGGGTGCCTG TCACAATTCT GAATTCTCCG GAATGTGTTC TTCTCCCTCG CCTGTCACCT 600
TCTAGATGTT CCCAAACACA TCACAACCCT GTCTATCAAA AACCTCCATT CAACGGATCT 660
ACTCCCAGTA 670