EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS049-04283

Organism

Homo sapiens

Tissue/cell

Fetal_spinal_cord

Coordinate

chr19:56135020-56135840

Target genes

Number: 20
Name	Ensembl ID

TMEM238	ENSG00000233493
RPL28	ENSG00000108107
NAT14	ENSG00000090971
SSC5D	ENSG00000179954
SBK2	ENSG00000187550
AC008735.15	ENSG00000231274
ZNF579	ENSG00000218891
FIZ1	ENSG00000179943
ZNF524	ENSG00000171443
ZNF865	ENSG00000261221
ZNF784	ENSG00000179922
ZNF580	ENSG00000213015
ZNF581	ENSG00000171425
CCDC106	ENSG00000173581
U2AF2	ENSG00000063244
EPN1	ENSG00000063245
AC010525.2	ENSG00000211571
AC010525.1	ENSG00000203305
NLRP9	ENSG00000185792
NLRP11	ENSG00000179873

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr19:56135507-56135517	GCCCCGCCCC	+	6.02
KLF5	MA0599.1	chr19:56135688-56135698	GCCCCGCCCC	+	6.02
Pou2f3	MA0627.1	chr19:56135534-56135550	AATTATGCAAATTATC	+	6.07
SP1	MA0079.4	chr19:56135504-56135519	GAGGCCCCGCCCCTT	+	6.18
SP1	MA0079.4	chr19:56135622-56135637	CAGGCCCCGCCCACC	+	6.67
SP2	MA0516.2	chr19:56135621-56135638	CCAGGCCCCGCCCACCA	+	6.14
SP3	MA0746.2	chr19:56135624-56135637	GGCCCCGCCCACC	+	6.14
SP4	MA0685.1	chr19:56135504-56135521	GAGGCCCCGCCCCTTAC	+	6.23
SP4	MA0685.1	chr19:56135622-56135639	CAGGCCCCGCCCACCAC	+	6.38

dbSUPER

Number of super-enhancer constituents: 6
ID	Coordinate	Tissue/cell

SE_68542	chr19:56135499-56168361	TC71
SE_68543	chr19:56135499-56168361	TC71
SE_68544	chr19:56135499-56168361	TC71
SE_68545	chr19:56135499-56168361	TC71
SE_68546	chr19:56135499-56168361	TC71
SE_68547	chr19:56135499-56168361	TC71

Enhancer Sequence

AGCTTAAACA TAAGCCGGCA CCCAGCTGAC TTCTCTCGTC TAAATTTAGC TGCCCCACCC 60
CTACTCTTGG CTCAATTTAT AGAAATTGGC TCAATTTTTA TTTCCTTTAT AGAACATATC 120
ACAGTAACTC TCCTTTATTG TCTCTCTCCT CTCAAGAGAC TGCAGGCTCC AAAAGAACAC 180
AACCCTTGTC TGTCTTGGTC ACTTCTCTAT TTACAGAGCC GAAGTAGGAG CTCAGTAAAT 240
GTTTGTTGAA TGAATGAATG TCCTCAATTA GTCTAATTCT GAGTGGGGTA ACGTGGAGGA 300
AGTTCCAAAG TCACCTAGAC CACCCACTTC TACCCCCAAA TTCTCCCTTG GGCATTCGAG 360
AAGCATCACT AAGACCCTTG AAGAATTATC CCCTACCCCG ACATAGGTGC TCCAATCATA 420
ATCCCCCACG TTTTTCAGGG TCACCTTCCC AACCTTCTAC CCTAGAATTA GCCCTAGAAT 480
TTATGAGGCC CCGCCCCTTA CAAGGCTCCA CCCAAATTAT GCAAATTATC CCTGGTAAGC 540
CCCCTTCCCT GGACCCAAAC CCGTCCCACA AGACAACACC GTCCTCAGAC TCCGCCCCCA 600
TCCAGGCCCC GCCCACCACC CATAGGTCCC TCCCCCACCC CGCCCACCAT GACATAGTCT 660
CCTCCCCTGC CCCGCCCCTC GCGAAACCAC AAGAAGCCCC ACCCCCAGGG CCATAGCACT 720
AAATACCTCC CTCGCCCACC CCCTCATAGG CCACGCCCCG GACCCGCCCC CCACACTACG 780
ACCTCCTCCC ACCTCGAGCC CCACGCCCAG GCCCCTTCCT 820