EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS049-00007

Organism

Homo sapiens

Tissue/cell

Fetal_spinal_cord

Coordinate

chr1:2120420-2120980

Target genes

Number: 13
Name	Ensembl ID

C1orf222	ENSG00000142609
RP11	ENSG00000233542
GABRD	ENSG00000187730
PRKCZ	ENSG00000067606
C1orf86	ENSG00000162585
AL590822.1	ENSG00000203301
SKI	ENSG00000157933
RP4	ENSG00000238240
MORN1	ENSG00000116151
RER1	ENSG00000157916
PEX10	ENSG00000157911
PANK4	ENSG00000157881
HES5	ENSG00000197921

dbSUPER

Number of super-enhancer constituents: 13
ID	Coordinate	Tissue/cell

SE_02984	chr1:2120458-2122921	Bladder
SE_24063	chr1:2120663-2122484	Colon_Crypt_2
SE_28207	chr1:2120473-2122885	Fetal_Intestine
SE_29530	chr1:2120461-2122870	Fetal_Intestine_Large
SE_40333	chr1:2120433-2122106	K562
SE_46689	chr1:2120655-2122919	Ovary
SE_47622	chr1:2120663-2122616	Pancreas
SE_54645	chr1:2120364-2127955	Stomach_Smooth_Muscle
SE_55632	chr1:2120625-2121047	Thymus
SE_62490	chr1:2120386-2191742	Tonsil
SE_68393	chr1:2120436-2162432	TC32
SE_68394	chr1:2120436-2162432	TC32
SE_69135	chr1:2120546-2121995	H9

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I002188

chr1

2120278

2122904

Enhancer Sequence

GCGACAGAGC GAGACTCCGT CTCAAAAAAG AAAAAAAAAA AAAAAAACAA AAAGAACGCC 60
ACCAGAGGCT GGGGCTGCTG GCTCACGCCT GTAATCCCAG CACTTCAGGA AGCCAAGGCG 120
GGAGGATCGC TTGGGCCTAG GAGTTCGAGA CCAGCCTGGG CAACATGGCA AGACCCCTCC 180
ATCTGTACAA AAAATACTAA AAGTCGCTGG GTGTGGTGAC GCGCGCCTGT AGTCCCAGCT 240
ATTCAGGAGG CTGAGGTGGG AGGATCATCA AGCCCAGGAG TCTGAGGCTG CAATGAGCCG 300
TGATTGCACC ACTGCACTCC AGCCTGGGCG ACAGAGCGAG ACCCTGTCTC AAAAAAAAAA 360
AAACAAAAAA AAAACCGTGA CTGCACATGA GCTAACCACG CCTGTCCACA AAGTTAGGAA 420
AACGAGCTAC CCTCAGCCCG TCCGCTGTCC ACAGTGGGGG CGCCAGGGGA AAGGGGTCAG 480
CTTCCCCGCC TGGGGCTGTG TCTGGTTCTG ATTGCACTGC AGTGAATCTG CCCTAAACCA 540
AACGTCAGAA AGAAAAGCGG 560