EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS047-07383

Organism

Homo sapiens

Tissue/cell

Fetal_placenta

Coordinate

chr12:6978560-6978850

Target genes

Number: 25
Name	Ensembl ID

GAPDH	ENSG00000111640
COPS7A	ENSG00000111652
GPR162	ENSG00000250510
U47924.11	ENSG00000256010
LEPREL2	ENSG00000110811
U47924.25	ENSG00000237240
CDCA3	ENSG00000111665
USP5	ENSG00000111667
TPI1	ENSG00000111669
RPL13P5	ENSG00000240370
LRRC23	ENSG00000010626
DSTNP2	ENSG00000248593
SPSB2	ENSG00000111671
ENO2	ENSG00000111674
ATN1	ENSG00000111676
C12orf57	ENSG00000111678
PTPN6	ENSG00000111679
U47924.27	ENSG00000257084
SCARNA12	ENSG00000238795
EMG1	ENSG00000126749
PHB2	ENSG00000215021
U47924.19	ENSG00000255896
C1S	ENSG00000182326
LPCAT3	ENSG00000111684
RP3	ENSG00000239701

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

CTCF	MA0139.1	chr12:6978746-6978765	TGTCCACTAGGGGGCAGTA	+	8.23
REL	MA0101.1	chr12:6978733-6978743	GGAAATCCCC	-	6.02
ZNF263	MA0528.1	chr12:6978656-6978677	AAAGGAAAAAGGGGAGGGGGA	+	6.49

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

SE_01489	chr12:6975456-6983422	Adrenal_Gland
SE_33622	chr12:6974813-6983567	H2171
SE_34601	chr12:6974701-6983477	HCT-116
SE_69094	chr12:6975007-6979655	H9

Enhancer Sequence

CTGGAGAAAG GGACCTTTGA GCCTATCCAG GGCCACAGAG ACTCAGAGGG TAGGGTCAGG 60
CCCTGGAGCC TGTCTTGGTC CCCATGCTGA TCCAGAAAAG GAAAAAGGGG AGGGGGAGTG 120
ACAATCTTTG CTTGGGGCCT ATGACTTCTC CAGCCCCAAG GTAGATGCCA CCTGGAAATC 180
CCCCAATGTC CACTAGGGGG CAGTAGGCCA CCGTTCTTCG TACTCCGGAG AACCTGGCTG 240
GAGAGCTCTT TCTTGTTCAC CCTTCCCTCC ATCTGTATCT CTGCCCTGCA 290