EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS038-04754

Organism

Homo sapiens

Tissue/cell

ESC_neuron

Coordinate

chr12:54734520-54735980

Target genes

Number: 4
Name	Ensembl ID

SMUG1	ENSG00000123415
AC078778.1	ENSG00000241785
HNRNPA1	ENSG00000135486
COPZ1	ENSG00000111481

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Hnf4a	MA0114.3	chr12:54734867-54734883	CTCAGACTTTGACCTC	-	6.17
Myod1	MA0499.1	chr12:54735269-54735282	ACCAGCTGTTCCT	+	6.04
Myog	MA0500.1	chr12:54735707-54735718	GACAGCTGCAG	+	6.62
Stat6	MA0520.1	chr12:54735020-54735035	TTTTTCCAGAGAATT	+	6.08
Tcf12	MA0521.1	chr12:54735707-54735718	GACAGCTGCAG	+	6.14

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH12I054340

chr12

54734670

54736338

Enhancer Sequence

TCTTTTTTTT TTGAGATGGA GTTTCGCTCT TATCACCCAG GCTGGAGTGC AATGGCGTGA 60
CCTTGGCTCA CTGCAGCCTC AGCCTCCCAA GTAGCTGGGA TTACAGGCAC GCGCTACCAC 120
CCCCGGCTAA TTTTTTGTAT CTTTAGTAGA GACAGGGTTT CAGCAGGTTG GCCAGACTGG 180
TCTCAAACTC CTGACCTCAT GATTCGCCCG CCTTGGCCTC CCAAAGTGTT GGGATTACAG 240
GTGTGAGCCA CCACACCCGG CCTGAATTCT TCCATCTTAT CTTGCCTACT CCAGATAAAA 300
CCTGTTTTCT TTTGTCCCTT AGTTGTACTG CTGCCCTGCT TGCTGTCCTC AGACTTTGAC 360
CTCCTTTGTT GTCAGCATCA GATCAGGGAA AAGCTTTGAA ACTTTGGTTC CTAACAAAGC 420
AGTATGTAGA TGCTAAGAGG CAGTCCGCCC ATGTCCATCA TTCCTGTCCC CTTCCCTCAT 480
ACCATGTCAC CCTGCCTGGG TTTTTCCAGA GAATTGTCTT GCAGTTCCAG GTTTCCATTC 540
CTAGGTTTAT AGTCACCATC AAGCTTGTTA CCTCCTGACT TTCCCAGAGT GATGTTTCCA 600
ACTTTAGATC TGTTGGAAGA AAGAAGAAAG GACACCCTCT CTCCCTCCAT ATTCTCCCCC 660
TCCTGTAGAA ATTTCTTCTG TCCCTGGTGT ATTAACTCCG GGCGAGCGTA GCATAAATCA 720
ATCAGCAGGT AGAGATTAGT TTAGAATTCA CCAGCTGTTC CTCCCTGTAA TTGGATGTAA 780
CTATGCAGGA CACCTTTTGA AACAGTTATC CAGTTACTAA ATGCCAGACC TGTCATGGGT 840
CTTCAGCTGA CTGCGACGGA TTAGCCCCTA AAGAGCTAGC GATTTAGCAG CCTGCATCTC 900
CGCCCCCTTT GCCAGGGAGA GCCTGGGAAT GGGCTCAGTG GTATGCTGGA TGCTTCTTTC 960
AGCTTGCAGA AAAGAAAGCT AAGATAGATC ATAGGGCAGG GTTTGCCTTT CTTTGGAGGA 1020
GGTTTTTGTA GCCTTTCCCC ATTCCTCAGC TTCATACAGT GAGTGAGGGT CTATGGAAGT 1080
GTTCTGTGCT TCTAGTGTTT TTTGTGTTCT CTGGCACTGC TTCCTGACAT GGGGTAGCTC 1140
CTAGGAAACA CTTGATGAGA ATGGTTTTAG GAGAGGTCTA GATTGCAGAC AGCTGCAGAG 1200
CCTCACTGTA GGGCTGGTAG GCTTCTGCCT TCAGACAGTC TTGGAAATGT GAGGTGGGGT 1260
TGCTTATGGC AGGGTCTTTT ATTTATTTTT CTTGGATTAC TCACTGCCCA TTCTCTGCCT 1320
CTACAATCCT TCCTTTTCCA TGTCAGTATT TCTCCCTTGC CCCATGCCTT GAAGGAGAGA 1380
AATCCAAGAT CCCAGGGCAA AACATAGTCA CTAATCATTC TGGCTTCCAG CTCTAGTGAC 1440
CCAACCCTGT CTTCTTTCCC 1460