EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS012-01160

Organism

Homo sapiens

Tissue/cell

Caco-2

Coordinate

chr1:235093830-235094140

dbSUPER

Number of super-enhancer constituents: 39
ID	Coordinate	Tissue/cell

SE_01666	chr1:235092553-235095108	Aorta
SE_06052	chr1:235092563-235095925	Brain_Hippocampus_Middle
SE_09160	chr1:235089274-235102029	CD14
SE_13412	chr1:235092302-235095085	CD34_Primary_RO01536
SE_14852	chr1:235090111-235096258	CD4_Memory_Primary_7pool
SE_21117	chr1:235092380-235094348	CD8_Memory_7pool
SE_23314	chr1:235092463-235096122	Colon_Crypt_1
SE_23955	chr1:235093106-235095692	Colon_Crypt_2
SE_25800	chr1:235089687-235101859	Duodenum_Smooth_Muscle
SE_26806	chr1:235093373-235094625	Esophagus
SE_27663	chr1:235089063-235101555	Fetal_Intestine
SE_28576	chr1:235088850-235101396	Fetal_Intestine_Large
SE_29689	chr1:235092238-235094048	Fetal_Muscle
SE_31235	chr1:235092263-235094078	Fetal_Thymus
SE_31572	chr1:235091850-235096149	Gastric
SE_33758	chr1:235092170-235101690	HCC1954
SE_34767	chr1:235092103-235099043	HeLa
SE_36952	chr1:235089804-235094553	HSMMtube
SE_40307	chr1:235092364-235094852	K562
SE_41640	chr1:235093134-235096135	LNCaP
SE_42265	chr1:235093078-235096175	Lung
SE_43462	chr1:235092226-235096141	MCF-7
SE_44805	chr1:235093190-235094119	NHLF
SE_45558	chr1:235090190-235094180	Osteoblasts
SE_47119	chr1:235087515-235103374	Panc1
SE_47599	chr1:235093135-235096097	Pancreas
SE_50040	chr1:235092229-235094403	RPMI-8402
SE_50071	chr1:235089709-235100691	Sigmoid_Colon
SE_51271	chr1:235092438-235095754	Skeletal_Muscle
SE_51773	chr1:235092334-235094038	Skeletal_Muscle_Myoblast
SE_52352	chr1:235089712-235101497	Small_Intestine
SE_54553	chr1:235090275-235096009	Stomach_Smooth_Muscle
SE_56760	chr1:235093122-235095649	VACO_400
SE_59259	chr1:235089283-235124733	Ly3
SE_60969	chr1:235059965-235155853	HBL1
SE_61435	chr1:234961094-235124239	Toledo
SE_62329	chr1:235047040-235185428	Tonsil
SE_63542	chr1:235092307-235094054	HSMM
SE_65393	chr1:235092372-235101616	Pancreatic_islets

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I234953

chr1

235089124

235101946

Enhancer Sequence

AAGCAGGTGG GGAGAGATGA GCAAATGCTG AGCAAAAAAG AGGTGGTGGT GACGCCTCTC 60
TAAAGTTTTC CATACCAAAA AAGCCCTGGT ACAAGGCAGG CACTGCTGGC AGCCCGGCCC 120
CACAAGCTTA CTTCCAGTGC AGGAATCCAA TGGGAACATG TGCCCCCAGG GCCACCCGAA 180
ACGCAAACTG CTCTCTGAAA ACCAGGTCAG CCTCTCTGTA GGAGTCTTGC CATGCAGAAA 240
ACACCAGGCC CTCTGGAAAC GCCCCCTGTT CACTGAGGGT CTCTGGCTGG CCGGCACTAT 300
GCCCAGCAAG 310