EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS003-19536

Organism

Homo sapiens

Tissue/cell

A549

Coordinate

chr17:38446320-38447300

Target genes

Number: 25
Name	Ensembl ID

GSDMB	ENSG00000073605
ORMDL3	ENSG00000172057
PSMD3	ENSG00000108344
SNORD124	ENSG00000238793
MED24	ENSG00000008838
THRA	ENSG00000126351
NR1D1	ENSG00000126368
MSL1	ENSG00000188895
CASC3	ENSG00000108349
RAPGEFL1	ENSG00000108352
WIPF2	ENSG00000171475
CDC6	ENSG00000094804
RARA	ENSG00000131759
GJD3	ENSG00000183153
Y	ENSG00000222881
TOP2A	ENSG00000131747
RP11	ENSG00000240125
IGFBP4	ENSG00000141753
TNS4	ENSG00000131746
CCR7	ENSG00000126353
SMARCE1	ENSG00000073584
KRT222	ENSG00000213424
KRT24	ENSG00000167916
TMEM99	ENSG00000167920
KRT10	ENSG00000186395

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

CTCF	MA0139.1	chr17:38447142-38447161	TGGTGCCATCTGGTGACCA	-	6.85
Foxq1	MA0040.1	chr17:38447053-38447064	AATTGTTTATT	+	6.02
HSF1	MA0486.2	chr17:38447063-38447076	TTCTGGAATTTTC	+	6.17
NFAT5	MA0606.1	chr17:38447070-38447080	ATTTTCCATT	+	6.02
NFATC1	MA0624.1	chr17:38447070-38447080	ATTTTCCATT	+	6.02
NFATC3	MA0625.1	chr17:38447070-38447080	ATTTTCCATT	+	6.02

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

SE_29564	chr17:38446570-38448048	Fetal_Muscle
SE_37177	chr17:38446147-38448147	HSMMtube
SE_44282	chr17:38446211-38447172	NHDF-Ad
SE_45871	chr17:38446131-38447700	Osteoblasts

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH17I040290

chr17

38446345

38447904

Enhancer Sequence

TGCTTACCGA ACTCCAGAGT TAGACACTTA CTGAGGTCAC TCTGAACTAC TTAATAAGTC 60
TGATCTTCAA TTCCTTAATA CTGAACTTAG TTCTGTCAAT GTTTTAAGTT ACCTTGTAGT 120
TACATGGTAT TATGAAACTT ACCTCAATAT TTGTGAAATT AAAAGAAACA AAAACGTGAC 180
ATGATGAATA TTTTCCATCC TTTAGGACAG TGATTGGTAA TTCTTTCTTG TTTTGGAACA 240
TTTATTTTTA AATGGGGGGT AATTTGGTTG TTTCTGGAGA CATTTTTGGT TGTTACAGCT 300
GGGGGTTGCT ACTGGCATAG TGGGTAGAGG CCAGGGATGC TGCTAGACAT TACAATGCAC 360
AGGACAGCTC CTTGACAATG AAGAATTATT TGGTCCAAGA TGTCAGTGGT GCCAAGGTTG 420
AGAAAACCTG TTTCAAAATA GCCTTACAAT TTCATCCTAC TAAAACCCAT TTGGTTTCTA 480
CTAAATGCAG TAGTCCCCAC TTATCCATGG GGGATACATT CCAAGACCCC CAGTGGACGC 540
CTGCAATCGA GGACAGTACC AAACCCTACA TATACTGTGT TTTTGATTTG ATAACCAAGT 600
CAGCTACTAA GTGACTAGTG GGTGGATAGC ATATACAGTG TGGATATGCT GGCTGAAGGG 660
ATGATTCATG TCTTGGGTAG GATGGTGCGG GATTTCATCA TGGCACTCCA CAGCATGCAA 720
TTTAAAACTT GTCAATTGTT TATTTCTGGA ATTTTCCATT TAGTATTTTC AGACTGAGGG 780
TAACTAGAAC GGTGGATGAA GGGACTACTG TAGTAAGATC AGTGGTGCCA TCTGGTGACC 840
AATATTTGCT GCTAAGTGAG AAGGCATTTT ATTTTGGTGG TTCTGACTAA GGTAGAAATT 900
CACCTCTTTC TGGAAGAGGC AGAGGTCTTG CACATCCTTT TACTATCCAA TGCTATGAGT 960
GACTACATTT TTATTTTATT 980