EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS003-00452

Organism

Homo sapiens

Tissue/cell

A549

Coordinate

chr1:17329470-17330820

Target genes

Number: 11
Name	Ensembl ID

NBPF1	ENSG00000219481
CROCCP2	ENSG00000215908
EIF1AP1	ENSG00000236698
RP11	ENSG00000228549
U1	ENSG00000199554
CROCC	ENSG00000058453
RP1	ENSG00000226526
MFAP2	ENSG00000117122
ATP13A2	ENSG00000159363
SDHB	ENSG00000117118
PADI2	ENSG00000117115

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr1:17330055-17330067	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr1:17330059-17330071	AAACAAACAAAC	-	6.32
IRF1	MA0050.2	chr1:17330145-17330166	CTTGTGTTTCTTTTTCTTTTT	+	6.11
Nr2f6(var.2)	MA0728.1	chr1:17330377-17330392	TGAACTCCTGACCTC	-	6.22

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I017003

chr1

17330121

17331087

Enhancer Sequence

CCTGTGAGCC CGGAAAGCGT GGAAGACTTT GTGTCCCGTG ACTGATAATG GCAGGGAATT 60
TGATGGTAAC TGTCCTCACT CCCTGTGTGA GGTCGCCCAG AGGTGTGTGG TCTACGCTGG 120
CCCAAGGAGA TCCCCAGGCG ACTGAAGTCC GGGTGTCCAC AGCTGTGGCA GCCAGCATAA 180
CCTCCCTCCG TGCTTCCATC CCTTCCCCAG CACTGCCTGG GATCAGCTTC AAAACAAACT 240
CCCTGCCCTT GAGCCCTTGT CTGGGGGTCT GCTTCTGCGG CATTCAAACT AAAGTGTGTG 300
AGCAGGGCCC GGTGGCTCAT GCCTGTAATT CTAGCACTTT GGGAGGCTGA GGCGGGTGGA 360
TCACCTGAGG TCAGGTATTT GAGAACAGCC TGGCCAACAT GGTGAAACCC CGTCCCTACA 420
AAACATGCAA AAATTAGCTG GGTGTGGTGG CATGCACCTG TAATCCCAAC TACTCGGGAG 480
GCTGAGGCAG GAGAATCGCT TGAACCCAGG AGGCGGAGGT GCAGTGAGCC GAGAATGCGG 540
CATTGCACTC CAGCCCGGGC AACAAGAGTG AAACTCCATC TTAAAAAACA AACAAACAAA 600
CCAAAAAAAC CACACACACA CACACACACA CACACACACA CACACACATA CACACAAACT 660
AAGGTGTGTG GTGAGCTTGT GTTTCTTTTT CTTTTTTTTT TTTTTTGAGA TGGAGTCATG 720
CTCTGTCATC CAGGCTAGAG TGCAGTGGCG CGATGTTGGC TCACTGCAAC CTCTGCCGCC 780
CAGGTTCAAG CGATTTTCCT GCCTCAGCCT CCCAAGTAGC TGGGATTACA GGCACATGCC 840
ATCACGCCCA GCTAATTTTT GTGTTTTTAG TAGAGATGGG GTTTCAGCAT CTTGGCCAGG 900
CTGATCTTGA ACTCCTGACC TCGTGATCCA CCTGTCTTGG CTTCCCAAAG TGCTGGGATT 960
ACAGGGGTGA GCCACCGCAC CCAGCCTGAG CTCATGTTTC TTAAGCCTTT TGTAGGTGGC 1020
AGAGCAGTGA CTAAACCCCA AGCAGACAGT CTGAGTACAG AGCTGATAGT CTGATTCACA 1080
GTGGTGTCAC AACCTCAGAT CACATTCGGT GCCAAGCTCT ACATAAATTA TTATCTATTT 1140
CACCATCAAA ACAATCCTAG GAGGCAGAAG TTATCTTCAT GCCCTATTTA TAGACAGAGA 1200
TCCCAGGCCT GGAGGGGCTC AGTAACCTGC CCAAGGTTTC AGACAGCAAA AGCATCAGAG 1260
CTGAGAGGGG AGCCCAGGCC ATGCCATGCC ACCGTCTGTG CCCAAACCAG TGCCACTCTG 1320
GGAGGTGACA TGAGCCACAC AGGCCCTGAC 1350