EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS002-00982

Organism

Homo sapiens

Tissue/cell

A375

Coordinate

chr1:201475380-201475750

Target genes

Number: 10
Name	Ensembl ID

TMEM9	ENSG00000116857
TNNI1	ENSG00000159173
RP11	ENSG00000224818
PHLDA3	ENSG00000174307
CSRP1	ENSG00000159176
RPS10P7	ENSG00000223396
NAV1	ENSG00000134369
IPO9	ENSG00000198700
SHISA4	ENSG00000198892
RNPEP	ENSG00000176393

dbSUPER

Number of super-enhancer constituents: 27
ID	Coordinate	Tissue/cell

SE_00341	chr1:201469012-201477260	Adipose_Nuclei
SE_01720	chr1:201474108-201477436	Aorta
SE_03124	chr1:201474646-201476962	Bladder
SE_03288	chr1:201474134-201477423	Brain_Angular_Gyrus
SE_04052	chr1:201471127-201479213	Brain_Anterior_Caudate
SE_04842	chr1:201471147-201479711	Brain_Cingulate_Gyrus
SE_05817	chr1:201447914-201479638	Brain_Hippocampus_Middle
SE_06742	chr1:201448865-201477808	Brain_Hippocampus_Middle_150
SE_07798	chr1:201448554-201479644	Brain_Inferior_Temporal_Lobe
SE_08857	chr1:201475435-201475859	Brain_Mid_Frontal_Lobe
SE_25848	chr1:201466771-201479440	Duodenum_Smooth_Muscle
SE_26585	chr1:201472173-201477458	Esophagus
SE_28254	chr1:201469055-201477115	Fetal_Intestine
SE_32167	chr1:201474151-201477392	Gastric
SE_34751	chr1:201471027-201477533	HeLa
SE_38401	chr1:201469024-201477352	HUVEC
SE_42560	chr1:201474095-201477464	Lung
SE_45227	chr1:201474068-201477084	NHLF
SE_45671	chr1:201467843-201477260	Osteoblasts
SE_49100	chr1:201474136-201477126	Right_Atrium
SE_50506	chr1:201474069-201477440	Sigmoid_Colon
SE_51555	chr1:201474346-201477126	Skeletal_Muscle
SE_52849	chr1:201472167-201477455	Small_Intestine
SE_54460	chr1:201474060-201477114	Spleen
SE_54518	chr1:201448446-201479292	Stomach_Smooth_Muscle
SE_65522	chr1:201474297-201477677	Pancreatic_islets
SE_67991	chr1:201468991-201535915	TC32

Enhancer Sequence

TCAGGGAGCA GCTGGTGGGT GGCTGGAGCC CAGGGCTCTA GGCAGAGCCT GAGCCCACTA 60
TTGCTCCAGC CGATTCCTGG GTCCTGGTTA GTTCACAACA GCACCAGAAC CAGAAGCATG 120
CAAAATATTC TCTAGTCTGT ACCAGTAGAT ACAATACCTG CCTCAGAGGG CTGATTGTTA 180
GCTAACACAT TGTGATTTGC TTTAAATGTG CTCAATACCA GCCCCTTTAT CACTTCCCAG 240
CTTTCAAGGA CTGAGGCCAC AAAACACTGA CTGCAGGCTC TTTCAGGTTT CAGTAACCAT 300
CACCACCTAG CACCAAGATT TGGAGTGGAG AGGTTTCCAT GCAGTTATTT CACAAGAGGG 360
AAAACTCACA 370